Implement the fine-mapping analysis using SuSiE method

Implement the fine-mapping analysis using SuSiE method

Usage

run_SuSiE(dat, ldRef, pval, nSampleSize, threads, withAlleles = TRUE)

Arguments

dat

data frame from TwoSampleMR::format_data() for exposure GWAS

ldRef

location of 1KG reference panel

pval

pvalue threshold for selecting SNPs

nSampleSize

sample size of the exposure GWAS

threads

number of threads used for plink

withAlleles

indicator of whether LD matrix includes effect and other alleles