plot the regional association plot for exp-, eQTL- and out-GWAS

plot the regional association plot for exp-, eQTL- and out-GWAS

Usage

plt.stack.region(
  geneInfo,
  datOut,
  outName,
  datQTL,
  qtlName,
  datExp,
  expName,
  ldRef
)

Arguments

geneInfo

dataset contains the gene info that is generally obtained from datGRCh37 or datGRCh38.

datOut

out-GWAS summary statistics obtained from TwoSampleMR::format_data()

outName

name of the outcome trait

datQTL

QTL-GWAS summary statistics obtained from TwoSampleMR::format_data() or with the same data format

qtlName

name of the eQTL trait

datExp

exp-GWAS summary statistics obtained from TwoSampleMR::format_data()

expName

name of the exposure trait

ldRef

1KG reference panel in plink format